ORIEL - Online Research Environment for the Life Sciences

ORIEL/E-BioSci Annual Workshops | ORIEL Partner Presentations

ORIEL / E-BioSci Annual Workshop Presentations

"Tightening the Net: Information Services for Biology", Hinxton, UK, 12-15 October 2004

"Dealing with the Data Deluge", Varenna, IT, 2-5 September 2003

E-BioSci/ORIEL Partners Summer Meeting, Wiesloch, DE, 21-24 June 2002

EMBO (European Molecular Biology Organization)

Les Grivell Presentation at the EMBO YIP-PhD course (Heidelberg, DE; 15th September 2004)

Training course and plenary presentation at the 9th Annual meeting of the European Association of Health Information Librarians (EAHIL, Santander, ES; 21st - 25th September 2004)

Presentation at EMBO sectoral meeting on Bioinformatics (Rome, IT; 1st - 3rd September 2004)

3rd Annual ORIEL / E-BioSci workshop on "Tightening the net: Information services for Biology" (Hinxton, UK; 12th - 15th October 2004)

Presentation by L.A. Grivell at BioCreative Biological Information Extraction workshop, 28th - 31st March 2004, Granada, Spain

Presentation by L.A. Grivell at special meeting organized by French Ministry of Research and CNRS, 27th April 2004, Paris, France

Presentation by L.A. Grivell at Highwire spring Publishers meeting, Stanford University, Palo
Alto, CA, 5 - 7th May 2004

Presentation by L.A. Grivell and contribution to open panel discussion on Open Access
scientific publishing, EMBO Young Investiogator Meeting, 8th June 2004, Heidelberg,
Germany.

Presentation by Prof. G. Tocchini-Valentini (chair EMBO EIP committee) to participants at
40th Anniversary Meeting of the EMBC, 20th June 2004, Heidelberg, Germany.

Presentation by L.A. Grivell and discussion with representatives from DFG and a delegation
from the National Natural Science Foundation of China (NSFC), 4th March 2004, Heidelberg, Germany.

Presentation by L.A. Grivell and discussion with Prof K. VijayRaghavan, Director,
National Centre for Biological Sciences (NCBS), Bangalore, India, 26th May 2004,
Heidelberg, Germany.

Project presentation by L.A. Grivell to representatives of the German Societies for Biology (Heidelberg, 5th February 2003)

Presentation by L.A. Grivell at MitEURO network meeting (QLG1-CT-2001-00966), Saariselka (FI), 24th - 27th April 2003

Presentation by L.A. Grivell at the UK National e-science center, Edinburgh, 28th April 2003

Presentation by L.A. Grivell at meeting of EMBO Publication and Membership committee,
Heidelberg (DE), 8th May 2003

Presentation by L.A. Grivell at EMBO Young Investigators meeting, Heidelberg (DE), 14th May 2003

Presentation by L.A. Grivell at EMBO Fellows Annual meeting, Heidelberg (DE), 19th May 2003

Presentation by L.A. Grivell at STM Publishers Annual Meeting, Amsterdam (NL), 15th - 16th May 2003

Presentation by L.A. Grivell at Annual meeting of UK ASLIB Life Sciences group, London (UK), 22nd May 2003

Presentation by L.A. Grivell at EMBC delegates meeting, Heidelberg (DE), 25th June 2003

Presentation by L.A. Grivell at EAHIL 8th Annual Conference, Köln (DE), 19th - 21st September 2002

Presentation by L.A. Grivell at EMBO Members Meeting, Oslo (N), 11th - 14th October 2002

Presentation by L.A. Grivell at EPSO Annual meeting, Brunnen (CH), 29th - 31st
October 2002

Presentation by L. A. Grivell to a high level delegation from the Chinese Academy of Sciences, 9th October 2002, Heidelberg (DE).

Presentation by L. A. Grivell: Biological Information from a user perspective IuK-2002 Meeting, Ulm 10-13 March 2002.

Presentation by L. A. Grivell at the EU-NSF All-Projects Meeting, 25-26 March 2002, Rome, Italy.

E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (M. Gay)

Presentation of the ORIEL project to the conference " Modèles opératoires de production et
de diffusion des collections scientifiques dans les bibliothèques numériques " Lyon, 29 - 30
May 2002.

Presentation at the EUNIS Conference in Porto, 20 - 23 June 2002.

CNR-ITB and CNR-IBC (Consiglio Nazionale delle Ricerche)

Luciano Milanesi presented a plenary talk at the ORIEL / E-BioSci Annual Workshop, Hinxton, UK; 12 - 15th October 2004.

ORIEL / E-BioSci 2nd Annual Workshop, 2nd - 5th September 2003, Varenna, IT (L. Milanesi, R. Butler, S.Pongor, G. Tocchini-Valentini, J. Hatton, A. Caprera, E. Rovida)

Practical course "Bioinformatics: Computer methods in Molecular Biology" ICGEB Trieste
28 June- 5 July 2003. (S. Pongor, L. Milanesi)

CSIC-CNB (Consejo Superior de Investigaciones Científicas)

BioCreative workshop to discuss the results of the BioCreative assessment. Granada, Spain.
28-31 March, 2004

E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (R. Hoffmann)

Presentation by Alfonso Valencia: Evaluation of performance of IE systems in Molecular Biology at the Second Meeting of the Special Interest Group on Text Data Mining. 2 August 2002, Edmonton, Canada.

Presentation by Alfonso Valencia: Extracting biological networks from text : an overview at 4th Biopathways Consortium Meeting. 1 August. Edmonton, Canada.

Presentation by Alfonso Valencia: Protein Interaction networks. Genes Proteins and Computers VII. Organised by the Collaborative Computing Project in Bioinformatics (CCP11). Southampton University, September 2002.

Presentation by Alfonso Valencia: Protein interaction networks, the Bioinformatics approach. AGM02. EMBNET. Open day of Bioinformatics Conferences. Instituto Gulbenkian de Ciência, Oeiras, September 2002.

Presentation by Alfonso Valencia: Developing Software Tools for Massive Sequence Analysis. 14th Meeting Methods of Protein Structure Analysis. International Association of Protein Structure Analysis and Proteomics. Valencia, September 2002.

Presentation by Alfonso Valencia: Bioinformatics approaches to the deciphering of protein interaction networks. 17th International Symposium on Medicinal Chemistry, Barcelona, September 2002.

Presentation by Alfonso Valencia: Predicting protein function from network information. Sociedad Española de Bioquímica y Biología Molecular, Leon, September 2002.

Presentation by Alfonso Valencia: Possibilities for the automatic classification of protein functions from the literature. Workshop on Ontology for Biology and Integrated Approaches for Functional Genomics. ESF programme Villa Bosch, Heidelberg November 2002.

Presentation by Alfonso Valencia: Automatic Ontology construction at the thirteenth international conference on Genome Informatics, GIW 2002, Tokyo, December 2002.

Presentation by Christian Blaschke: Literature asisted ontology construction at SOFG (Standards and Ontologies for Functional Genomics), 17-20 November 2002, Hinxton Hall Conference Centre, Cambridge, UK.

Presentation by Alfonso Valencia at Information extraction in Biology, organized by Genome Information Science Project (MEXT) and Information Mobility Project (CREST, JST). Kyoto, Japan. 20 February, 2002.

Presentation by Alfonso Valencia: Information extraction applied to biomedical research. Bayer, Germany. 25 February, 2002.

Presentation by Alfonso Valencia: Protein interaction extraction and prediction. Astra-Zenneca. Stockholm, 8 March, 2002

Presentation by Alfonso Valencia: Protein interaction networks. Linnaeus Centre for Bioinformatics & Dept. of Genetics and Pathology, Rudbeck Laboratory. Uppsala University, 7 March, 2002.

Presentation by Alfonso Valencia: Redes de interacción. Institut Cavanilles de Biodiversitat i Biologia Evolutiva. Valencia, 24 March 2002.

ORIEL / E-BioSci joint Annual Workshop, Hinxton, UK, 12 - 15th October 2004

Poster C-41 "Development of Public Literature Services at EBI": Peter Stoehr, Lichun Wang, Weimin Zhu, Rodrigo Lopez, Intelligent Systems in Molecular Biology (ISMB) Conference, Glasgow, 30 Jul - 4 Aug 2004.

Poster G-15 "Accessing Databases Provided by the EBI using Web Services"
Sharmila Pillai et al, Intelligent Systems in Molecular Biology (ISMB) Conference, Glasgow, 30 Jul - 4 Aug 2004.

Demonstration (Aug 2) "Introduction to Web Services from the EBI", Intelligent Systems in Molecular Biology (ISMB) Conference, Glasgow, 30 Jul - 4 Aug 2004.

E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data
deluge' (Peter Stoehr, Dietrich Schuhmann, Adam Lowe)

Oracle Life Sciences User Group, OracleWorld, San Francisco, Sept. 10th 2003
"MEDLINE in Oracle XML-DB and Oracle Text" (Peter Stoehr)

EUR (Erasmus University)

Jan Kors. Thesaurus-based disambiguation of gene symbols. E-BioSci/ORIEL Annual Workshop, 12-15 October 2004, Hinxton, UK

Erik van Mulligen and Martijn Schuemie attended Clin2003 (Computational Linguistics in
the Netherlands), 19 December 2003, Antwerpen, Belgium.

Jan Kors attended the Twelfth Text REtrieval Conference (TREC), 19-21 November 2003,
Gaithersburg, USA.

Erik van Mulligen. Using contextual queries. AMIA Annual Symposium, 8-12 November
2003, Washington DC, USA.

Barend Mons. From reading to … . E-BioSci/ORIEL Annual Workshop, 2-5 September 2003, Varenna, Italy.

Erik van Mulligen. Thesaurus maintenance: how to improve? E-BioSci/ORIEL Annual
Workshop, 2-5 September 2003, Varenna, Italy.

Martijn Schuemie. Disambiguation of gene and protein symbols: current status. EBioSci/
ORIEL Annual Workshop, 2-5 September 2003, Varenna, Italy.

ICGEB (International Centre for Genetic Engineering and Biotechnology)

Pongor, Sandor. ORIEL / E-BioSci 2nd Annual Workshop, 2nd - 5th September 2003, Varenna, IT

IGH (Institut de Génétique Humaine)

Participation to AS STIC - CNRS Working group ("Intégration et interopérabilité de
sources de données génomique"), January 9, 2004

E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (D. Chaume, K. Combres)

Ingenta plc

ORIEL Web Services: a REST-ful Lightweight Services Integration Protocol Based. Presentation by David Durand, Ingenta plc, at the University of Bologna, Italy, 20 May 2005.

David Durand presented a plenary talk entitled "ORIEL Integration: Loosely-coupled Web Integration via Document-based Web Services" at the ORIEL / E-BioSci joint annual Workshop, Hinxton, UK; 12 - 15th October 2004.

E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (D. Durand presentation)

INRIA (Institut National de Recherche en Informatique et Automatique)

Alan Viari presented a plenary talk at the ORIEL/EBioSci Annual Workshop, Hinxton, UK; 12-15th October 2004.

W3C Workshop on Semantic Web for Life Sciences, Cambridge Mass. USA; 27-28th October 2004

Alain Viari provided a demonstration of BOXml and BOXtk at the ORIEL/E-BioSci Annual Workshop, Hinxton, UK; 12-15th October 2004.

E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (A. Brun, A. Viari)

LIRMM (Laboratoire d'Informatique, de Robotique et de Microéelectronique de Montpellier)

Jean Sallantin gave a demonstration of the BiODS system at the ORIEL / E-BioSci Annual Workshop, Hinxton, UK; 12 - 15th October 2004

Sallantin J. L'apprentissage supervisé pour assister la découverte scientifique. Conférence Apprentissage CAP 2004, Montpellier 14, 15, 16 June 2004

Sallantin J. Divol J. Da Nobrega G., Castro E., Duroux P., Ferneda E Descartes a
methodological elimination of paradox for (de)ontology Building International Workshop
Computational Models of Scientific Reasoning and Applications, Buenos Aires, 14-15 Sept
2003

Patrice Duroux, "ORIEL e-BioTasks: an approach with the ODS platform",
E-BioSci/ORIEL Annual Workshop, 'Dealing with the data deluge', Varenna, 2-5
September 2003

UOXF-AT (University of Oxford)

Copyright Clearance for Print, Broadcast and Multimedia Production. British Universities Film & Video Council, (London, UK; 5th October 2004).

David Shotton: keynote address entitled Using ontologies to provide semantic richness in biological image databases at the Seventh Annual Bio-Ontologies meeting at the ISMB conference in Glasgow, UK; 30 July 2004.

The following presentations were made to the 3rd Annual ORIEL / E-BioSci Workshop Tightening the Net: Information Services for Biology", Hinxton, UK; 12-15 October 2004:

David Shotton: Shotton, DM and Catton, C Creating Living Ontologies using Named Graphs.

Chris Catton: Catton, C, Sparks, S and Shotton, DM Breaking New Ground, Breaking New Code: Experiences with the BioImage Database and Ontologies.

Chris Holland: Holland, C, Catton, C and Shotton, DM ImageBLAST - data integration and display for bioinformatics research.

Chris Catton: Catton, C, Sparks, S and Shotton, DM Demonstration of the BioImage database

John Pybus: Pybus, J and Shotton, DM Integrating the VIDOS video customization service with the BioImage database.

Chris Catton presented a paper entitled Experiences in building an ontology-driven image database for biologists at the Second Conference on Standards and Ontologies for Functional Genomics, (University of Pennsylvania School of Medicine, Philadelphia, PA; 23-26 October 2004).

Chris Catton presented a paper by Catton & Shotton entitled The use of Named Graphs to enable ontology evolution at the World Wide Web Consortium's Workshop on the Semantic Web for Life Sciences,(Cambridge, Massachusetts, USA; 27-28 October 2004).

David Shotton spoke at the GlaxoSmithKlein International Image Informatics Symposium,
11th May 2004, Harlow, UK on the topic: From Image to Knowledge: Design considerations for the BioImage Database and other developments in image bioinformatics.

David Shotton addressed a meeting of Oxford academics, in the Bytes for Biologists seminar
series, 19th May 2004, on the topic: Handling digital images and videos in the BioImage
Database.

E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (D. Shotton, C. Catton, S. Sparks)

David Shotton presented a paper The BioImage Database - Multidimensional research
images and their relationship to the wider online research information environment for the
life science at the E-BioSci/ORIEL open meeting in Edinburgh, 28 April 2003

Catton, C. and Shotton, D. M. (2002) Making sense of images: ontologies and the BioImage Database. Proc. Conf. on Standards and Ontologies for Functional Genomics. Hinxton, Cambridge, November 17-20, 2002.

Sparks, S. and Shotton, D. M. (2002) Ontology Organiser: a Jena based DAML+OIL
Constraint Propagator and Datatype Manager. Proc. Conf. on Standards and Ontologies
for Functional Genomics. Hinxton, Cambridge, November 17-20, 2002.





	Online Research Information Environment for the Life Sciences


Presentations ORIEL/E-BioSci Annual Workshops \| ORIEL Partner Presentations ORIEL / E-BioSci Annual Workshop Presentations "Tightening the Net: Information Services for Biology", Hinxton, UK, 12-15 October 2004 "Dealing with the Data Deluge", Varenna, IT, 2-5 September 2003 E-BioSci/ORIEL Partners Summer Meeting, Wiesloch, DE, 21-24 June 2002 ORIEL Partner Presentations EMBO (European Molecular Biology Organization) Les Grivell Presentation at the EMBO YIP-PhD course (Heidelberg, DE; 15th September 2004) Training course and plenary presentation at the 9th Annual meeting of the European Association of Health Information Librarians (EAHIL, Santander, ES; 21st - 25th September 2004) Presentation at EMBO sectoral meeting on Bioinformatics (Rome, IT; 1st - 3rd September 2004) 3rd Annual ORIEL / E-BioSci workshop on "Tightening the net: Information services for Biology" (Hinxton, UK; 12th - 15th October 2004) Presentation by L.A. Grivell at BioCreative Biological Information Extraction workshop, 28th - 31st March 2004, Granada, Spain Presentation by L.A. Grivell at special meeting organized by French Ministry of Research and CNRS, 27th April 2004, Paris, France Presentation by L.A. Grivell at Highwire spring Publishers meeting, Stanford University, Palo Alto, CA, 5 - 7th May 2004 Presentation by L.A. Grivell and contribution to open panel discussion on Open Access scientific publishing, EMBO Young Investiogator Meeting, 8th June 2004, Heidelberg, Germany. Presentation by Prof. G. Tocchini-Valentini (chair EMBO EIP committee) to participants at 40th Anniversary Meeting of the EMBC, 20th June 2004, Heidelberg, Germany. Presentation by L.A. Grivell and discussion with representatives from DFG and a delegation from the National Natural Science Foundation of China (NSFC), 4th March 2004, Heidelberg, Germany. Presentation by L.A. Grivell and discussion with Prof K. VijayRaghavan, Director, National Centre for Biological Sciences (NCBS), Bangalore, India, 26th May 2004, Heidelberg, Germany. Project presentation by L.A. Grivell to representatives of the German Societies for Biology (Heidelberg, 5th February 2003) Presentation by L.A. Grivell at MitEURO network meeting (QLG1-CT-2001-00966), Saariselka (FI), 24th - 27th April 2003 Presentation by L.A. Grivell at the UK National e-science center, Edinburgh, 28th April 2003 Presentation by L.A. Grivell at meeting of EMBO Publication and Membership committee, Heidelberg (DE), 8th May 2003 Presentation by L.A. Grivell at EMBO Young Investigators meeting, Heidelberg (DE), 14th May 2003 Presentation by L.A. Grivell at EMBO Fellows Annual meeting, Heidelberg (DE), 19th May 2003 Presentation by L.A. Grivell at STM Publishers Annual Meeting, Amsterdam (NL), 15th - 16th May 2003 Presentation by L.A. Grivell at Annual meeting of UK ASLIB Life Sciences group, London (UK), 22nd May 2003 Presentation by L.A. Grivell at EMBC delegates meeting, Heidelberg (DE), 25th June 2003 Presentation by L.A. Grivell at EAHIL 8th Annual Conference, Köln (DE), 19th - 21st September 2002 Presentation by L.A. Grivell at EMBO Members Meeting, Oslo (N), 11th - 14th October 2002 Presentation by L.A. Grivell at EPSO Annual meeting, Brunnen (CH), 29th - 31st October 2002 Presentation by L. A. Grivell to a high level delegation from the Chinese Academy of Sciences, 9th October 2002, Heidelberg (DE). Presentation by L. A. Grivell: Biological Information from a user perspective IuK-2002 Meeting, Ulm 10-13 March 2002. Presentation by L. A. Grivell at the EU-NSF All-Projects Meeting, 25-26 March 2002, Rome, Italy. E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (M. Gay) Presentation of the ORIEL project to the conference " Modèles opératoires de production et de diffusion des collections scientifiques dans les bibliothèques numériques " Lyon, 29 - 30 May 2002. Presentation at the EUNIS Conference in Porto, 20 - 23 June 2002. CNR-ITB and CNR-IBC (Consiglio Nazionale delle Ricerche) Luciano Milanesi presented a plenary talk at the ORIEL / E-BioSci Annual Workshop, Hinxton, UK; 12 - 15th October 2004. ORIEL / E-BioSci 2nd Annual Workshop, 2nd - 5th September 2003, Varenna, IT (L. Milanesi, R. Butler, S.Pongor, G. Tocchini-Valentini, J. Hatton, A. Caprera, E. Rovida) Practical course "Bioinformatics: Computer methods in Molecular Biology" ICGEB Trieste 28 June- 5 July 2003. (S. Pongor, L. Milanesi) CSIC-CNB (Consejo Superior de Investigaciones Científicas) BioCreative workshop to discuss the results of the BioCreative assessment. Granada, Spain. 28-31 March, 2004 E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (R. Hoffmann) Presentation by Alfonso Valencia: Evaluation of performance of IE systems in Molecular Biology at the Second Meeting of the Special Interest Group on Text Data Mining. 2 August 2002, Edmonton, Canada. Presentation by Alfonso Valencia: Extracting biological networks from text : an overview at 4th Biopathways Consortium Meeting. 1 August. Edmonton, Canada. Presentation by Alfonso Valencia: Protein Interaction networks. Genes Proteins and Computers VII. Organised by the Collaborative Computing Project in Bioinformatics (CCP11). Southampton University, September 2002. Presentation by Alfonso Valencia: Protein interaction networks, the Bioinformatics approach. AGM02. EMBNET. Open day of Bioinformatics Conferences. Instituto Gulbenkian de Ciência, Oeiras, September 2002. Presentation by Alfonso Valencia: Developing Software Tools for Massive Sequence Analysis. 14th Meeting Methods of Protein Structure Analysis. International Association of Protein Structure Analysis and Proteomics. Valencia, September 2002. Presentation by Alfonso Valencia: Bioinformatics approaches to the deciphering of protein interaction networks. 17th International Symposium on Medicinal Chemistry, Barcelona, September 2002. Presentation by Alfonso Valencia: Predicting protein function from network information. Sociedad Española de Bioquímica y Biología Molecular, Leon, September 2002. Presentation by Alfonso Valencia: Possibilities for the automatic classification of protein functions from the literature. Workshop on Ontology for Biology and Integrated Approaches for Functional Genomics. ESF programme Villa Bosch, Heidelberg November 2002. Presentation by Alfonso Valencia: Automatic Ontology construction at the thirteenth international conference on Genome Informatics, GIW 2002, Tokyo, December 2002. Presentation by Christian Blaschke: Literature asisted ontology construction at SOFG (Standards and Ontologies for Functional Genomics), 17-20 November 2002, Hinxton Hall Conference Centre, Cambridge, UK. Presentation by Alfonso Valencia at Information extraction in Biology, organized by Genome Information Science Project (MEXT) and Information Mobility Project (CREST, JST). Kyoto, Japan. 20 February, 2002. Presentation by Alfonso Valencia: Information extraction applied to biomedical research. Bayer, Germany. 25 February, 2002. Presentation by Alfonso Valencia: Protein interaction extraction and prediction. Astra-Zenneca. Stockholm, 8 March, 2002 Presentation by Alfonso Valencia: Protein interaction networks. Linnaeus Centre for Bioinformatics & Dept. of Genetics and Pathology, Rudbeck Laboratory. Uppsala University, 7 March, 2002. Presentation by Alfonso Valencia: Redes de interacción. Institut Cavanilles de Biodiversitat i Biologia Evolutiva. Valencia, 24 March 2002. ORIEL / E-BioSci joint Annual Workshop, Hinxton, UK, 12 - 15th October 2004 Poster C-41 "Development of Public Literature Services at EBI": Peter Stoehr, Lichun Wang, Weimin Zhu, Rodrigo Lopez, Intelligent Systems in Molecular Biology (ISMB) Conference, Glasgow, 30 Jul - 4 Aug 2004. Poster G-15 "Accessing Databases Provided by the EBI using Web Services" Sharmila Pillai et al, Intelligent Systems in Molecular Biology (ISMB) Conference, Glasgow, 30 Jul - 4 Aug 2004. Demonstration (Aug 2) "Introduction to Web Services from the EBI", Intelligent Systems in Molecular Biology (ISMB) Conference, Glasgow, 30 Jul - 4 Aug 2004. E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (Peter Stoehr, Dietrich Schuhmann, Adam Lowe) Oracle Life Sciences User Group, OracleWorld, San Francisco, Sept. 10th 2003 "MEDLINE in Oracle XML-DB and Oracle Text" (Peter Stoehr) EUR (Erasmus University) Jan Kors. Thesaurus-based disambiguation of gene symbols. E-BioSci/ORIEL Annual Workshop, 12-15 October 2004, Hinxton, UK Erik van Mulligen and Martijn Schuemie attended Clin2003 (Computational Linguistics in the Netherlands), 19 December 2003, Antwerpen, Belgium. Jan Kors attended the Twelfth Text REtrieval Conference (TREC), 19-21 November 2003, Gaithersburg, USA. Erik van Mulligen. Using contextual queries. AMIA Annual Symposium, 8-12 November 2003, Washington DC, USA. Barend Mons. From reading to … . E-BioSci/ORIEL Annual Workshop, 2-5 September 2003, Varenna, Italy. Erik van Mulligen. Thesaurus maintenance: how to improve? E-BioSci/ORIEL Annual Workshop, 2-5 September 2003, Varenna, Italy. Martijn Schuemie. Disambiguation of gene and protein symbols: current status. EBioSci/ ORIEL Annual Workshop, 2-5 September 2003, Varenna, Italy. ICGEB (International Centre for Genetic Engineering and Biotechnology) Pongor, Sandor. ORIEL / E-BioSci 2nd Annual Workshop, 2nd - 5th September 2003, Varenna, IT IGH (Institut de Génétique Humaine) Participation to AS STIC - CNRS Working group ("Intégration et interopérabilité de sources de données génomique"), January 9, 2004 E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (D. Chaume, K. Combres) Ingenta plc ORIEL Web Services: a REST-ful Lightweight Services Integration Protocol Based. Presentation by David Durand, Ingenta plc, at the University of Bologna, Italy, 20 May 2005. David Durand presented a plenary talk entitled "ORIEL Integration: Loosely-coupled Web Integration via Document-based Web Services" at the ORIEL / E-BioSci joint annual Workshop, Hinxton, UK; 12 - 15th October 2004. E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (D. Durand presentation) INRIA (Institut National de Recherche en Informatique et Automatique) Alan Viari presented a plenary talk at the ORIEL/EBioSci Annual Workshop, Hinxton, UK; 12-15th October 2004. W3C Workshop on Semantic Web for Life Sciences, Cambridge Mass. USA; 27-28th October 2004 Alain Viari provided a demonstration of BOXml and BOXtk at the ORIEL/E-BioSci Annual Workshop, Hinxton, UK; 12-15th October 2004. E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (A. Brun, A. Viari) LIRMM (Laboratoire d'Informatique, de Robotique et de Microéelectronique de Montpellier) Jean Sallantin gave a demonstration of the BiODS system at the ORIEL / E-BioSci Annual Workshop, Hinxton, UK; 12 - 15th October 2004 Sallantin J. L'apprentissage supervisé pour assister la découverte scientifique. Conférence Apprentissage CAP 2004, Montpellier 14, 15, 16 June 2004 Sallantin J. Divol J. Da Nobrega G., Castro E., Duroux P., Ferneda E Descartes a methodological elimination of paradox for (de)ontology Building International Workshop Computational Models of Scientific Reasoning and Applications, Buenos Aires, 14-15 Sept 2003 Patrice Duroux, "ORIEL e-BioTasks: an approach with the ODS platform", E-BioSci/ORIEL Annual Workshop, 'Dealing with the data deluge', Varenna, 2-5 September 2003 UOXF-AT (University of Oxford) Copyright Clearance for Print, Broadcast and Multimedia Production. British Universities Film & Video Council, (London, UK; 5th October 2004). David Shotton: keynote address entitled Using ontologies to provide semantic richness in biological image databases at the Seventh Annual Bio-Ontologies meeting at the ISMB conference in Glasgow, UK; 30 July 2004. The following presentations were made to the 3rd Annual ORIEL / E-BioSci Workshop Tightening the Net: Information Services for Biology", Hinxton, UK; 12-15 October 2004: David Shotton: Shotton, DM and Catton, C Creating Living Ontologies using Named Graphs. Chris Catton: Catton, C, Sparks, S and Shotton, DM Breaking New Ground, Breaking New Code: Experiences with the BioImage Database and Ontologies. Chris Holland: Holland, C, Catton, C and Shotton, DM ImageBLAST - data integration and display for bioinformatics research. Chris Catton: Catton, C, Sparks, S and Shotton, DM Demonstration of the BioImage database John Pybus: Pybus, J and Shotton, DM Integrating the VIDOS video customization service with the BioImage database. Chris Catton presented a paper entitled Experiences in building an ontology-driven image database for biologists at the Second Conference on Standards and Ontologies for Functional Genomics, (University of Pennsylvania School of Medicine, Philadelphia, PA; 23-26 October 2004). Chris Catton presented a paper by Catton & Shotton entitled The use of Named Graphs to enable ontology evolution at the World Wide Web Consortium's Workshop on the Semantic Web for Life Sciences,(Cambridge, Massachusetts, USA; 27-28 October 2004). David Shotton spoke at the GlaxoSmithKlein International Image Informatics Symposium, 11th May 2004, Harlow, UK on the topic: From Image to Knowledge: Design considerations for the BioImage Database and other developments in image bioinformatics. David Shotton addressed a meeting of Oxford academics, in the Bytes for Biologists seminar series, 19th May 2004, on the topic: Handling digital images and videos in the BioImage Database. E-BioSci/ORIEL Annual Workshop, Varenna, 2-5 September 2003, 'Dealing with the data deluge' (D. Shotton, C. Catton, S. Sparks) David Shotton presented a paper The BioImage Database - Multidimensional research images and their relationship to the wider online research information environment for the life science at the E-BioSci/ORIEL open meeting in Edinburgh, 28 April 2003 Catton, C. and Shotton, D. M. (2002) Making sense of images: ontologies and the BioImage Database. Proc. Conf. on Standards and Ontologies for Functional Genomics. Hinxton, Cambridge, November 17-20, 2002. Sparks, S. and Shotton, D. M. (2002) Ontology Organiser: a Jena based DAML+OIL Constraint Propagator and Datatype Manager. Proc. Conf. on Standards and Ontologies for Functional Genomics. Hinxton, Cambridge, November 17-20, 2002.		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Online Research Information Environment for the Life Sciences