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Sunday April 23, 2017
BioCreative Workshop Articles
 


 

BioCreAtIvE Task 1A: entity identification with a stochastic tagger
Kinoshita S, Cohen KB, Ogren PV, Hunter L
BMC Bioinformatics 2005, 6(Suppl 1):S4 (24 May 2005)
[Abstract] [Full text] [PDF]

BioCreAtIvE Task 1A: gene mention finding evaluation
Yeh A, Morgan A, Colosimo M, Hirschman L
BMC Bioinformatics 2005, 6(Suppl 1):S2 (24 May 2005)
[Abstract] [Full text] [PDF]

Data preparation and interannotator agreement: BioCreAtIvE Task 1B
Colosimo ME, Morgan AA, Yeh AS, Colombe JB, Hirschman L
BMC Bioinformatics 2005, 6(Suppl 1):S12 (24 May 2005)
[Abstract] [Full text] [PDF]

Overview of BioCreAtIvE task 1B: normalized gene lists
Hirschman L, Colosimo M, Morgan A, Yeh A
BMC Bioinformatics 2005, 6(Suppl 1):S11 (24 May 2005)
[Abstract] [Full text] [PDF]

Evaluation of BioCreAtIvE assessment of task 2
Blaschke C, Leon EA, Krallinger M, Valencia A
BMC Bioinformatics 2005, 6(Suppl 1):S16 (24 May 2005)
[Abstract] [Full text] [PDF]

Overview of BioCreAtIvE: critical assessment of information extraction for biology
Hirschman L, Yeh A, Blaschke C, Valencia A
BMC Bioinformatics 2005, 6(Suppl 1):S1 (24 May 2005)
[Abstract] [Full text] [PDF]

An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R
BMC Bioinformatics 2005, 6(Suppl 1):S17 (24 May 2005)
[Abstract] [Full text] [PDF]

Gene/protein name recognition based on support vector machine using dictionary as features
Mitsumori T, Fation S, Murata M, Doi K, Doi H
BMC Bioinformatics 2005, 6(Suppl 1):S8 (24 May 2005)
[Abstract] [Full text] [PDF]

Recognition of protein/gene names from text using an ensemble of classifiers
Zhou GD, Shen D, Zhang J, Su J, Tan SH
BMC Bioinformatics 2005, 6(Suppl 1):S7 (24 May 2005)
[Abstract] [Full text] [PDF]

Exploring the boundaries: gene and protein identification in biomedical text
Finkel J, Dingare S, Manning CD, Nissim M, Alex B, Grover C
BMC Bioinformatics 2005, 6(Suppl 1):S5 (24 May 2005)
[Abstract] [Full text] [PDF]

Learning Statistical Models for Annotating Proteins with Function Information using Biomedical Text
Ray S, Craven M
BMC Bioinformatics 2005, 6(Suppl 1):S18 (24 May 2005)
[Abstract] [Full text] [PDF]

Identifying gene and protein mentions in text using conditional random fields
McDonald R, Pereira F
BMC Bioinformatics 2005, 6(Suppl 1):S6 (24 May 2005)
[Abstract] [Full text] [PDF]

Protein annotation as term categorization in the gene ontology using word proximity networks
Verspoor K, Cohn J, Joslyn C, Mniszewski S, Rechtsteiner A, Rocha LM, Simas T
BMC Bioinformatics 2005, 6(Suppl 1):S20 (24 May 2005)
[Abstract] [Full text] [PDF]

Automatically annotating documents with normalized gene lists
Crim J, McDonald R, Pereira F
BMC Bioinformatics 2005, 6(Suppl 1):S13 (24 May 2005)
[Abstract] [Full text] [PDF]

 
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